Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015899197.1_cds_XP_016449162.1_43744
CDS Infomation

[gene=LOC107774200] [db_xref=GeneID:107774200] [protein=putative late blight resistance protein homolog R1B-16] [protein_id=XP_016449162.1] [location=join(7590..8620,8697..8744,8829..9948)] [gbkey=CDS]
Sequence

ATGGTCGGCTTTGAGAGAGAGACTGAAATGCTTATGGATCAACTTGTGACTGGACCTCGG
CAATTAGATGTGATCTCAATTTTCGGAATGCCAGGACTAGGAAAAACAACTTTGGCTAAG
AGATTGTATGATCATGAATCTATTTCAAATCGCTTTGATATTCGCTTGTGGTGTTGTTCT
TCCCAATCTTATGATAAGAGATCTCTCTTGTTTGAATTACTGAATCATATTTGTAAACTT
GATACTAGTACCAAAGAAAAGAGTGATGATGAGCTAGCTGAGATGCTCTACAAACATTTG
AAGGGAAAGAGGTACCTTATTGTTGTCGATGATGTGTGGAGTTGTGAGGTATGGGATGAT
ATAAAGAGACCATTTCCAGATGACGATAAAGGAAGTAGGATTATTTTGACGACCAGACTT
GAATCAATCGCCACATATGCCATGATCAATTCGAGTCATCATCACCTTCGCCTGTTCACA
GAAGAAGAAAGCTGGATGCTAATGAAGGAGAAGGTATTCAAAGAAGACAATTGTTATTGT
TCTCAAGAACTCGAGGAGATCGGTAAGCAAATAGCGAGTAAGTGTGGAGGATTACCCCTG
GCAGTTGTATTGGTCGCTGGCCTTCTTGCAGAACATGATAAGGAAGTAATTTACTGGGAA
GAAGTCGGCGAAAGTTTGAAGTCAAAAATAAAAGGTTGCATGGATATAGTTGAATCGAGC
TACCAACACTTACCCATTCATTTGCAAAGATGCTTTCTCTACTTTGCTTCATTTCTAGAG
GACCATCAAGTTCCTGTTCAAAAACTGATACGACTGTGGATCGCTGAAAATTTTATTGAA
GCAAGTAGTACATCAAAGAGCTTAGAGATGATTGCAATGGATTACATGATGGATTTAATT
AGGAGCAACCTAGTGATGGTGGCTAAATTAAATTCCTTAGGGGAGATCAAAGCAGTCCAT
ATTCATGATTTAATACACGAATTTAGCTTGGTGCAAGCTAAGAAGGACAACTTTTCGCAG
AGGATAAATGAAGTAGGTGAACTTTATTCTTCTCGCGGAAGTTGGCTGAGGAGAATTGGA
CTTGGTATATTTCCATCTTCTGAGAATCGTTGTAAACGTGTGAATGTTTTAGCACCTTGT
CAAGTGCTTCTTGGAGATAAATTTAGCTTTGGACGAAATATCAACACCTTACGGTTCCTT
TCCAGTGTAAATTCTCCTTTTGTTGATTATGATTTGACTAAATCCTGGAAACATCTCAGA
GTATTAGATTTGGGTTCCGTAAAGCTGTGTAGGACAAGTGTAGATGCATTACAATATCTA
ATTCATTTGAAGTATTTGGAGCTGCAGTTGTACTTGTACTTTGATCACATTCCAAATTCA
ATATGCAACCTGAAGGAGCTAGAGACGTTTATAGTGACAGGAATTTATGGTCAAGCCTGC
AATCCAAAAACCATTTGGGGCATGACAAGCTTGAGGCATCTGCATATAAATGATCTTTAT
ATAGATCTGTGGCCAAGTGAGCAATCCGAAAACCAATTAGAGGATCTTGACAATTTACAA
ACATGTTCTGGTATGGTTATTTATCCTGGGGGAGTGGGGGATCTCCAGTATTTTATGAAA
AGATTTCCCAATCTTGAAAAGCTCAGTTGTCAATTGTATGGTTCAGGAACCCCTTCTGGC
AATTTCTTTCCTGCTTTTGAAACTCTCAGCCAGCTTAAATCTCTCAAGATTGGTGTCTCT
GGGGCGGTGGTAGATCCCTATGGTTTCGAGGACTTCACGTACCCCTCAAACCTCAAAAAA
TTAACTCTAGTATATCTTAGGCTCCCCTGGAGTAAACTTTCAACCATTGGCAGACTGTCC
AACCTTGAAGTTATGAAATTAGAAGAAAATTCTTTCATCGGGAGAAAATGGGACGTTAAC
GATGGGGAGTTTCCTAACCTTAAGGTTTTGAAATTAAAGAAACTAGGATTCTCAGAATGG
ACTGCCTCTGATGACTCGTACCCTAACCTTCAGAAAGTACTGGTGCATAGTTGTTGGAGC
CTAGAGGAAATCCCTGAATGTTTCGGAAGCAATTGTACGCTGCAACTGATTGAGGTTAGA
TCATGCGGAGACAATGCTGTAAAGTCTGCTTTGAAAGTTAAGGAAATGCAAATTGAGGAG
ATGGGAAATTCTGAATTCAAAGTCATTATTTCTAAGTGA

Peptide Sequence

PEP ID

XP_016449162.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana tabacum]
Sequence

MVGFERETEMLMDQLVTGPRQLDVISIFGMPGLGKTTLAKRLYDHESISNRFDIRLWCCS
SQSYDKRSLLFELLNHICKLDTSTKEKSDDELAEMLYKHLKGKRYLIVVDDVWSCEVWDD
IKRPFPDDDKGSRIILTTRLESIATYAMINSSHHHLRLFTEEESWMLMKEKVFKEDNCYC
SQELEEIGKQIASKCGGLPLAVVLVAGLLAEHDKEVIYWEEVGESLKSKIKGCMDIVESS
YQHLPIHLQRCFLYFASFLEDHQVPVQKLIRLWIAENFIEASSTSKSLEMIAMDYMMDLI
RSNLVMVAKLNSLGEIKAVHIHDLIHEFSLVQAKKDNFSQRINEVGELYSSRGSWLRRIG
LGIFPSSENRCKRVNVLAPCQVLLGDKFSFGRNINTLRFLSSVNSPFVDYDLTKSWKHLR
VLDLGSVKLCRTSVDALQYLIHLKYLELQLYLYFDHIPNSICNLKELETFIVTGIYGQAC
NPKTIWGMTSLRHLHINDLYIDLWPSEQSENQLEDLDNLQTCSGMVIYPGGVGDLQYFMK
RFPNLEKLSCQLYGSGTPSGNFFPAFETLSQLKSLKIGVSGAVVDPYGFEDFTYPSNLKK
LTLVYLRLPWSKLSTIGRLSNLEVMKLEENSFIGRKWDVNDGEFPNLKVLKLKKLGFSEW
TASDDSYPNLQKVLVHSCWSLEEIPECFGSNCTLQLIEVRSCGDNAVKSALKVKEMQIEE
MGNSEFKVIISK

Transcript Sequence

Gene sequence data has not been registered.